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Atomistic understanding of interfacial processing mechanism of silicon in water environment: A ReaxFF moleculardynamics simulation

Frontiers of Mechanical Engineering 2021, Volume 16, Issue 3,   Pages 570-579 doi: 10.1007/s11465-021-0642-6

Abstract: Simulation results show that the substrate is highly passivated under high humidity, and the passivation

Keywords: silicon     ReaxFF     molecular dynamics     friction     damage    

Molecular dynamics simulation of diffusivity

LIU Juanfang, ZENG Danling, LI Qin, GAO Hong

Frontiers in Energy 2008, Volume 2, Issue 3,   Pages 359-362 doi: 10.1007/s11708-008-0039-9

Abstract: Equilibrium molecular dynamics simulation was performed on water to calculate its diffusivity by adopting

Keywords: diffusivity     Equilibrium molecular     influence     potential    

Effect of ligand chain length on hydrophobic charge induction chromatography revealed by molecular dynamics

Lin ZHANG, Yan SUN

Frontiers of Chemical Science and Engineering 2013, Volume 7, Issue 4,   Pages 456-463 doi: 10.1007/s11705-013-1357-y

Abstract: adsorption, desorption, and conformational transition of the proteins with CL2 and CL4 were examined using moleculardynamics simulations.The simulation results elucidated the effect of the ligand chain length, which is beneficial for the

Keywords: adsorption     desorption     irreversibility     protein conformational transition     molecular dynamics simulation    

Molecular dynamics simulation on DNA translocating through MoS

Daohui Zhao, Huang Chen, Yuqing Wang, Bei Li, Chongxiong Duan, Zhixian Li, Libo Li

Frontiers of Chemical Science and Engineering 2021, Volume 15, Issue 4,   Pages 922-934 doi: 10.1007/s11705-020-2004-z

Abstract: Herein, molecular dynamics simulations were performed to design a conceptual device to sequence DNA with

Keywords: DNA sequencing     MoS2     molecular dynamics simulation     nanopore     ionic current    

Enhanced separation of tetrafluoropropanol from water via carbon nanotubes membranes: insights from moleculardynamics simulations

Frontiers of Environmental Science & Engineering 2023, Volume 17, Issue 11, doi: 10.1007/s11783-023-1740-y

Abstract:

● MD simulations unveil the transport mechanism for TFP-water mixture through CNTs.

Keywords: Fluorinated alcohol     Carbon nanotube     Molecular simulation     Fluorine modified    

Evaluation of the compatibility between rubber and asphalt based on molecular dynamics simulation

Fucheng GUO, Jiupeng ZHANG, Jianzhong PEI, Weisi MA, Zhuang HU, Yongsheng GUAN

Frontiers of Structural and Civil Engineering 2020, Volume 14, Issue 2,   Pages 435-445 doi: 10.1007/s11709-019-0603-x

Abstract: In this study, molecular models of different rubbers and chemical fractions of asphalt were built toperform the molecular dynamics simulation.

Keywords: rubber asphalt     compatibility     rubber content     molecular dynamics simulation    

Molecular dynamics study of water diffusion in an amphiphilic block copolymer with large difference in

Yang Zhou, Phillip Choi

Frontiers of Chemical Science and Engineering 2017, Volume 11, Issue 3,   Pages 440-447 doi: 10.1007/s11705-017-1626-2

Abstract: Isothermal-isobaric molecular dynamics simulation was used to study the diffusion mechanism of water

Keywords: molecular dynamics simulation     amphiphilic block copolymer     free volume     water diffusivity     fujita model    

Molecular simulation of the interaction mechanism between CodY protein and DNA in

Linchen Yuan, Hao Wu, Yue Zhao, Xiaoyu Qin, Yanni Li

Frontiers of Chemical Science and Engineering 2019, Volume 13, Issue 1,   Pages 133-139 doi: 10.1007/s11705-018-1737-4

Abstract: In order to study the mechanism of interaction between CodY and its target DNA, molecular docking andmolecular dynamics simulations were used to explore the binding process at molecular level.

Keywords: CodY     DNA     molecular docking     molecular dynamics    

Advances in molecular dynamics simulation of ultra-precision machining of hard and brittle materials

Xiaoguang GUO,Qiang LI,Tao LIU,Renke KANG,Zhuji JIN,Dongming GUO

Frontiers of Mechanical Engineering 2017, Volume 12, Issue 1,   Pages 89-98 doi: 10.1007/s11465-017-0412-7

Abstract: This paper provides a review of present research on the molecular dynamics simulation of ultra-precision

Keywords: MD simulation     ultra-precision machining     hard and brittle materials     machining mechanism     review    

parameters to study self-healing and interface properties of crumb rubber modified asphalt based on moleculardynamics simulation

Dongliang HU, Jianzhong PEI, Rui LI, Jiupeng ZHANG, Yanshun JIA, Zepeng FAN

Frontiers of Structural and Civil Engineering 2020, Volume 14, Issue 1,   Pages 109-122 doi: 10.1007/s11709-019-0579-6

Abstract: interface properties of crumb rubber modified asphalt (CRMA) using thermodynamic parameters based on the molecularsimulation approach.The molecular models of CRMA were built with representative structures of the virgin asphalt and the

Keywords: crumb rubber modified asphalt     surface free energy     self-healing     interface properties     molecular dynamicssimulation    

Study on the gas permeabilities in styrene-butadiene rubber by molecular dynamics simulation

Hailu LIU, Xuejia DING, Jun YI, Liqun ZHANG, Sizhu WU,

Frontiers of Chemical Science and Engineering 2010, Volume 4, Issue 3,   Pages 257-262 doi: 10.1007/s11705-009-0270-x

Abstract: In this research, molecular dynamics (MD)simulations were used to study the transport properties of smallThe condensed-phase optimized molecular potentials for atomistic simulation studies (COMPASS) force fielddiffusion coefficient increased as the FFV increases, which is in accordance with the analysis of the small molecular

Keywords: diffusion     atomistic simulation     permeability     chemical structure     relationship    

styrene-butadiene-styrene copolymer on the aging resistance of asphalt: An atomistic understanding from reactive moleculardynamics simulations

Frontiers of Structural and Civil Engineering 2021, Volume 15, Issue 5,   Pages 1261-1276 doi: 10.1007/s11709-021-0761-5

Abstract: characteristics of base asphalt and SBS-modified asphalt by reaction force field (ReaxFF) and classical moleculardynamics simulations.

Keywords: SBS asphalt     oxidative aging     asphalt hardening     ReaxFF     molecular dynamics    

Mechanical responses of pristine and defective hexagonal boron-nitride nanosheets: A molecular dynamics

Mohammad SALAVATI, Arvin MOJAHEDIN, Ali Hossein Nezhad SHIRAZI

Frontiers of Structural and Civil Engineering 2020, Volume 14, Issue 3,   Pages 623-631 doi: 10.1007/s11709-020-0616-5

Abstract: In this work we conducted classical molecular dynamics (MD) simulation to investigate the mechanicalMD simulation results demonstrate a high load-bearing capacity of extremely defective (amorphized) h-BN

Keywords: hexagonal boron-nitride     mechanical properties     crack     notch     point defects     molecular dynamics    

Temperature difference-powered carbon nanotube bearings

Quanwen HOU, Bingyang CAO, Zengyuan GUO

Frontiers in Energy 2011, Volume 5, Issue 1,   Pages 49-52 doi: 10.1007/s11708-010-0111-0

Abstract: Molecular dynamics simulations are conducted to study the motion of carbon nanotube-based nanobearings

Keywords: temperature difference-induced motion     carbon nanotubes     nanobearing     molecular dynamics simulation    

Introduction to the special section on the Symposium on Computational Fluid Dynamics and Molecular Simulation

Tianwei TAN, Peiyong QIN,

Frontiers of Chemical Science and Engineering 2010, Volume 4, Issue 3,   Pages 241-241 doi: 10.1007/s11705-009-0285-3

Title Author Date Type Operation

Atomistic understanding of interfacial processing mechanism of silicon in water environment: A ReaxFF moleculardynamics simulation

Journal Article

Molecular dynamics simulation of diffusivity

LIU Juanfang, ZENG Danling, LI Qin, GAO Hong

Journal Article

Effect of ligand chain length on hydrophobic charge induction chromatography revealed by molecular dynamics

Lin ZHANG, Yan SUN

Journal Article

Molecular dynamics simulation on DNA translocating through MoS

Daohui Zhao, Huang Chen, Yuqing Wang, Bei Li, Chongxiong Duan, Zhixian Li, Libo Li

Journal Article

Enhanced separation of tetrafluoropropanol from water via carbon nanotubes membranes: insights from moleculardynamics simulations

Journal Article

Evaluation of the compatibility between rubber and asphalt based on molecular dynamics simulation

Fucheng GUO, Jiupeng ZHANG, Jianzhong PEI, Weisi MA, Zhuang HU, Yongsheng GUAN

Journal Article

Molecular dynamics study of water diffusion in an amphiphilic block copolymer with large difference in

Yang Zhou, Phillip Choi

Journal Article

Molecular simulation of the interaction mechanism between CodY protein and DNA in

Linchen Yuan, Hao Wu, Yue Zhao, Xiaoyu Qin, Yanni Li

Journal Article

Advances in molecular dynamics simulation of ultra-precision machining of hard and brittle materials

Xiaoguang GUO,Qiang LI,Tao LIU,Renke KANG,Zhuji JIN,Dongming GUO

Journal Article

parameters to study self-healing and interface properties of crumb rubber modified asphalt based on moleculardynamics simulation

Dongliang HU, Jianzhong PEI, Rui LI, Jiupeng ZHANG, Yanshun JIA, Zepeng FAN

Journal Article

Study on the gas permeabilities in styrene-butadiene rubber by molecular dynamics simulation

Hailu LIU, Xuejia DING, Jun YI, Liqun ZHANG, Sizhu WU,

Journal Article

styrene-butadiene-styrene copolymer on the aging resistance of asphalt: An atomistic understanding from reactive moleculardynamics simulations

Journal Article

Mechanical responses of pristine and defective hexagonal boron-nitride nanosheets: A molecular dynamics

Mohammad SALAVATI, Arvin MOJAHEDIN, Ali Hossein Nezhad SHIRAZI

Journal Article

Temperature difference-powered carbon nanotube bearings

Quanwen HOU, Bingyang CAO, Zengyuan GUO

Journal Article

Introduction to the special section on the Symposium on Computational Fluid Dynamics and Molecular Simulation

Tianwei TAN, Peiyong QIN,

Journal Article